Use nQuire's Data

If you happen to like nQuire's data preparation more than ours, uses their data in our program. After processing samples with nQuire's create and view functions, the resulting text file can be read into R. To prepare the data frame for nQuack, we reduce the three column data frame to two columns by randomly sampling allele A or B for every site.

Usage

process_nquire(file)

Arguments

file

Output text file created with nQuire.

Value

Numeric matrix with total coverage and coverage for a randomly sampled allele.