Function reference • AutoPop

Simulating data with AutoPop

Wrapper functions to simulate a single time step or multiple generations.

one.iter.f.choosy(): Simulate a single generation.

gen.iter.f.choosy(): Simulate multiple generations.

Post-Simulation Analysis

Functions for understanding model outputs.

write.one.rep(): Processing function to subset a single replicate from a model set.

mars.cls(): MAR(1) Conditional least squares parameter estimates.

stability(): Ives et al. 2003 stability metrics calculator.

Everything Else

Functions used within our stochastic model.

cytotype_repro_mate(): Reproduction function.

matrix_cytotype_repro_mate(): Lazy reproduction function.

mature.surv.calc(): Mature survival - Calculates probability of mature survival.

alphabeta.calc(): Mature survival - Calculates alpha and beta from mean and variance.

muvar.calc(): Mature survival - Calculates mean and variance from alpha and beta.

var.option(): Mature survival - Calculate variance from env.ci and mu.

form.autopop(): Format multiple generation simulation.

env.copula(): Environmental Copula - Calculates correlation probability.

mu.options(): Max mean allowed

surv.shape(): Survival shape - Calculates the alpha and beta value for survival beta distributions